Download the System 3.14 software from Agilent's website (see link above). Unzip it into a convenient directory (say, a new directory on the Desktop), preserving directory structure.
Inside this directory are five further directories – DISK1 through DISK4, and PVTEST. These correspond to the five different discs in the SYSTEM and PVTEST set.
Take one blank floppy disc, and copy the contents of the DISK1 directory into the root of the floppy (that is, A:\ if you're using Windows). Replace the disc with another blank, then repeat for DISK2 through DISK4 and PVTEST.
Insert disc 1 into the analyser's front floppy drive, and toggle both power switches to the ON position – first the LINE switch on the rear panel, then the STANDBY switch on the front panel.
When the analyser finishes the self test, the message “LOADING SYSTEM FILE” will appear. Don't worry about any hard disc errors at this stage. The analyser will continue to read the disc for about 10 minutes before displaying the main screen – you may wish to go and prepare the aforementioned “beverage of your choice”.
When the analyser has booted, touch the “Configuration” button, then select “Hard Disk”. Touch “Load”, then select “Format Disk” from the pop-up menu. Press Execute. You will be asked (twice!) to confirm that you really, really want to format the hard drive. You do, so confirm both requests.
Touch “Format Disk”, and select “Make Directory”. Enter “SYSTEM” in “New Directory Name”. Press Execute. Select “SYSTEM” with the spinner, then press “Change Dir.”
Now touch “Hard Disk” and select “Flexible Disk”. Touch “Load”, and select “Copy”. Use the Spinner to select the first file. Press Execute. Repeat for all the files on Disk 1.
Remove Disk 1 and insert Disk 2, then roll the Spinner to refresh the file list. Copy all the files onto the HDD as above. Repeat this for all the other disks, in any order you like (though it's usually easiest to do DISK2, 3, 4, then finally PVTEST).
Now remove the last disk (this should be PVTEST), and flip the front-panel power switch to STANDBY. Count to ten, then flip the switch back to “ON”. The analyser should now boot from the hard drive.